PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.E0GLY

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 198aa MW: 21862.1 Da PI: 8.6594

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.E0GLY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.5	6.5e-15	80	170	1	96
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f vl++s+v +s+++ p k + ++ ++ t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ Aradu.E0GLY 80 FHVVLSKSHVRRSCLMG-PSKDLVDIlpfAEV------PTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFE 169 56677888888888444.77777677554322......3677889******3.45566799***********************9988877765 PP E CS B3 96 v 96 v Aradu.E0GLY 170 V 170 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-18	75	174	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.29E-17	75	174	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.06E-17	78	174	No hit	No description
PROSITE profile	PS50863	11.871	79	176	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-13	80	169	IPR003340	B3 DNA binding domain
SMART	SM01019	8.0E-9	80	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
SLQQHRKHRD VVGGGFRKFW RVLPVDNVTP LPTASSMSSP GSSSTSRVSV EEQAPLPKPA 60 DPAAKLSSDE IAPLSGNPFF HVVLSKSHVR RSCLMGPSKD LVDILPFAEV PTVLKCGGES 120 WDMVYRGHAP GRKFFDGGWR KFVKANCLVE GDACVFELMA NSDEKIVFEV QILRGDVPKV 180 FFKRDRIGES EQKPIVID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.E0GLY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949889.1	1e-115	B3 domain-containing protein Os04g0386900
Refseq	XP_029148196.1	1e-115	B3 domain-containing protein Os04g0386900
TrEMBL	A0A445ECH2	1e-113	A0A445ECH2_ARAHY; Uncharacterized protein
TrEMBL	A0A445ED73	1e-113	A0A445ED73_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-10	related to vernalization1 1