PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E0PKG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 219aa    MW: 25769.6 Da    PI: 10.1733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E0PKGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-105633698
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 ++l+ ++g +W++    ++++g++++ kGWkeF+    L+ g ++ F+++g+s+   +v +f+
  Aradu.E0PKG  5 VKLQPPDGTEWRIDW--TNRDGEILFDKGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 63
                 78999**********..*******************************9986555..888886 PP
2B343.27.2e-141402171899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  lp  f++ + ++++   +  +     ++W  ++iy  +++  +++ +W+ Fvk+n+Lk+g +++F+l++r++ el+v+++r+
  Aradu.E0PKG 140 LPVCFFRMYFENTK---QYAILRVGKKQWHATMIYYPNRKNALIS-NWRLFVKENNLKAGNVCIFELINRQDPELKVHIRRS 217
                  67777777755533...356667788*********9998777666.***********************99999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.125165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-12372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-13374IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-8563IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-19116217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-16117217IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-6124218IPR003340B3 DNA binding domain
CDDcd100171.74E-11140216No hitNo description
PfamPF023621.2E-11140217IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292163218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MPNPVKLQPP DGTEWRIDWT NRDGEILFDK GWKEFATFYT LENGHVLWFE YNGTSNIKVN  60
IFDMTALEID YPSNGRIGDD NSVEILDEPP PRRDRGRPKK KVIAEPKQSL IREAKKFKSK  120
NPSFVIKIKQ KQQTGSPANL PVCFFRMYFE NTKQYAILRV GKKQWHATMI YYPNRKNALI  180
SNWRLFVKEN NLKAGNVCIF ELINRQDPEL KVHIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.E0PKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025624968.21e-146B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A445B0X91e-145A0A445B0X9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-15B3 family protein