PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.E5HY5

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 236aa MW: 26957.4 Da PI: 8.545

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.E5HY5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	70	89	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+F+r n++ H+ Aradu.E5HY5 70 FACPLCFKTFNRYNNMQMHM 89 78*****************9 PP
2	zf-C2H2	14.1	0.00013	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F + + ++H +++ Aradu.E5HY5 154 FTCRKCSKAFAVRGDWRTHEKNC 176 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.68E-5	65	92	No hit	No description
PROSITE profile	PS50157	9.619	70	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.83	70	92	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-6	70	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.12E-6	136	174	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-5	140	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	55	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEVQNNNNNK VPLHLGLQST VVVQDSSVLE EDEEEEKITV ASEYVMSNGI NRGQYWIPTP 60 TQILIGPTQF ACPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA MLKLPCYCCA 120 AGCKNNIDHP RAKPLKDFRT LQTHYKRKHG LKPFTCRKCS KAFAVRGDWR THEKNCGKRW 180 YCSCGSDFKH KRSLKDHIKA FGNGHKSYAI NDHLCVDQDD NNGAASEVEE NDSFHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.E5HY5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015952592.2	0.0	zinc finger protein WIP5-like
Swissprot	Q9SVY1	1e-115	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A445A9B8	1e-161	A0A445A9B8_ARAHY; Uncharacterized protein
STRING	GLYMA15G03830.1	1e-128	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-117	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]