PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.E93WH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 382aa MW: 44356.5 Da PI: 7.5723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.E93WH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.3	1.2e-13	43	117	1	75
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgk 75 +fY +Y+k+ GFs rksk+ k+ gei+k++fvC ++g+ree+ + +++++++r e rtgC+a++ ++ ++ Aradu.E93WH 43 DFYLKYSKSKGFSARKSKTFKN-SIGEIYKQKFVCHRKGFREEKYYTmEKRKKEPRLEIRTGCEARMDYFQRCVAH 117 6***************9998.7788************9998566777899*********876665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-11	43	112	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.011	193	231	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
SEDILEATYA VDSVQNITTL KFSENFAEEI GKYHFYTLQL AFDFYLKYSK SKGFSARKSK 60 TFKNSIGEIY KQKFVCHRKG FREEKYYTME KRKKEPRLEI RTGCEARMDY FQRCVAHLCF 120 KEFNADYEST RGVPVMQTCI ELLERYAVEL YTHEIFLLFR PFLSRGGSMQ VLNMDNNDDC 180 IKYIVCKHGR PDFMWTVDFR QEDMIFMCTC LRMESFGIPY EHIVKVLVDR DICEIFRSLV 240 LNRWTKKVKS ALNDPSGFTR NAVVISRQSA LMEFSKQLTV VAAKVPERYE ETRDLIKELY 300 SSYKASGVAK SSNSYAHQSG VGSGQPSRKK RQCCSVCQME GHKKTTCPWQ KDIDNNVIED 360 EANGSDDGDV YPEPTAELDS DN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

SEDILEATYA VDSVQNITTL KFSENFAEEI GKYHFYTLQL AFDFYLKYSK SKGFSARKSK  60
TFKNSIGEIY KQKFVCHRKG FREEKYYTME KRKKEPRLEI RTGCEARMDY FQRCVAHLCF  120
KEFNADYEST RGVPVMQTCI ELLERYAVEL YTHEIFLLFR PFLSRGGSMQ VLNMDNNDDC  180
IKYIVCKHGR PDFMWTVDFR QEDMIFMCTC LRMESFGIPY EHIVKVLVDR DICEIFRSLV  240
LNRWTKKVKS ALNDPSGFTR NAVVISRQSA LMEFSKQLTV VAAKVPERYE ETRDLIKELY  300
SSYKASGVAK SSNSYAHQSG VGSGQPSRKK RQCCSVCQME GHKKTTCPWQ KDIDNNVIED  360
EANGSDDGDV YPEPTAELDS DN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.E93WH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025616564.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445A482	0.0	A0A445A482_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-12	FAR1-related sequence 5