PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EDM0A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 521aa    MW: 59778.8 Da    PI: 9.2617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EDM0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-1151137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   ++i+++  + s+e k +++ +    +++t+++   +  a++ ++  k  g w ++k++l+H+H+++p
  Aradu.EDM0A  51 KFYRNYAKAAGFSTRVRCTNRK--GNKIKNQLITYSRERKWKSKISP---TEKTNPTAGLNYPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998877..55566666667777777766555...89999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-951137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198308344IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4317341IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4319346IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDHSTLDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN RKGNKIKNQL ITYSRERKWK SKISPTEKTN PTAGLNYPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPNKA EMLKQHRKLS MSIRRTIENN DEAVCVWVYY ADLYEDRHIW  180
VPIYLDHHFW AGMRSTQRSE SMHSFFNKYI TQNSLLIQFV KQYDNCLGSR EQADRESDAA  240
DFHTVIPRAT KSSIEAQFQD AYTHAKFREV QAQFRGKANC ITRLNNSALG YSIYEVGEQV  300
SSSIFNKFAV TYDSVAAEVK CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK  360
VKRRHTHIKS SHDEPLMEPR SKRFDQLVFR LQNICEFDSE SKELNAILYH AYDNVMAEME  420
ALKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR LGSKLEKQIA NVTKKKKTKV  480
LSDINLFDAA SAAHSKSSQY QGHVMNYQFK VPASGDNSLG V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EDM0A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-33far-red elongated hypocotyls 3