PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.EF2HJ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 277aa MW: 29707.8 Da PI: 9.679

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.EF2HJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	132.6	3.9e-41	62	180	35	154
DUF702 35 CathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaY 132 athvkstWvpaakrrerqqqlaa++ +++++a++ + ++++ +++sal +t+ a++ ele+ ++P+ v+s+a frcvrvs +dd +e++aY Aradu.EF2HJ 62 AATHVKSTWVPAAKRRERQQQLAALQDHQNRDASKRPRDGGNSNNPSTSSALVCTT-RLASTGLELEQGNFPSIVNSPAEFRCVRVSPLDDVNEQYAY 158 58*********************9998776666666666665556555555554.6677888999999************************ PP DUF702 133 qtavsigGhvfkGiLydqGlee 154 qtav+igGh+fkGiLyd+G+++ Aradu.EF2HJ 159 QTAVNIGGHLFKGILYDYGPDS 180 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.3E-37	62	179	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	8.0E-24	131	178	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MRAASFSIWI SGHNRVVAHH HQARPLFHRD LYSSAVALGV GPSGASDEQS PSRSAVMAMR 60 SAATHVKSTW VPAAKRRERQ QQLAALQDHQ NRDASKRPRD GGNSNNPSTS SALVCTTRLA 120 STGLELEQGN FPSIVNSPAE FRCVRVSPLD DVNEQYAYQT AVNIGGHLFK GILYDYGPDS 180 ENASYYGGEG STSAIAGGQP LNLITGTDSG TTATATAPGV SSAEALDVDP SSLYNPAPIN 240 TYMAGSSGTQ FFPHHPRSKE KNNKIGNRKE QRKRKTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	275	QRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.EF2HJ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025687197.1	1e-153	protein SHI RELATED SEQUENCE 1 isoform X1
Swissprot	Q9SD40	5e-48	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1S3UQF5	1e-62	A0A1S3UQF5_VIGRR; protein SHI RELATED SEQUENCE 1 isoform X2
STRING	XP_007156095.1	2e-61	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-33	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]