PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EGK1M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 122aa    MW: 14032.8 Da    PI: 9.7085
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EGK1MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.91.1e-32151151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Aradu.EGK1M  1 KRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 51
                 79***********************************************96 PP
2K-box67.35.2e-2357122570
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                  +++++ ++++++ +q++  Lk+ +e Lq++qR+llGedL++++  eLqqLe+qLe++l++iRs+Kn
  Aradu.EGK1M  57 QTTQVRNHDTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKN 122
                  5566889999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002659.94E-36153No hitNo description
SuperFamilySSF554552.49E-28170IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-32152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.604153IPR002100Transcription factor, MADS-box
PfamPF003195.4E-28249IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-201530IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-203051IPR002100Transcription factor, MADS-box
PfamPF014866.7E-1863122IPR002487Transcription factor, K-box
PROSITE profilePS5129710.6266122IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
KRIENKVNRQ VTFSKRRNGL LKKAYELSVL CDAEVALIIF SNRGKLYEFS SSSSLPQTTQ  60
VRNHDTQNTY QDYVTLKAYV ELLQSSQRNL LGEDLTKMTS TELQQLENQL ESALTNIRST  120
KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-17252959MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-17252959MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-17252959MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-17252959MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A2e-17252959Myocyte-specific enhancer factor 2A
3mu6_B2e-17252959Myocyte-specific enhancer factor 2A
3mu6_C2e-17252959Myocyte-specific enhancer factor 2A
3mu6_D2e-17252959Myocyte-specific enhancer factor 2A
6byy_A3e-172521060MEF2 CHIMERA
6byy_B3e-172521060MEF2 CHIMERA
6byy_C3e-172521060MEF2 CHIMERA
6byy_D3e-172521060MEF2 CHIMERA
6bz1_A3e-172521060MEF2 CHIMERA
6bz1_B3e-172521060MEF2 CHIMERA
6bz1_C3e-172521060MEF2 CHIMERA
6bz1_D3e-172521060MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EGK1M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9474647e-48AY947464.1 Prunus dulcis MADS-box transcription factor (MADS3) mRNA, complete cds.
GenBankEF4403527e-48EF440352.1 Prunus persica transcription factor MADS7 (MADS7) mRNA, complete cds.
GenBankJQ6867257e-48JQ686725.1 Prunus avium transcription factor MADS4 (MADS4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945801.16e-77truncated transcription factor CAULIFLOWER A
SwissprotQ7Y0403e-53EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A445KHZ31e-53A0A445KHZ3_GLYSO; MADS-box protein EJ2
TrEMBLK7KNE21e-53K7KNE2_SOYBN; Uncharacterized protein
STRINGGLYMA05G07286.12e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]