PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EHA06
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 306aa    MW: 32878.5 Da    PI: 10.0229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EHA06genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08121146227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +  +  Ck+Gd+C+FaHg+
  Aradu.EHA06 121 KTRLCNKYNSSEGCKFGDKCHFAHGE 146
                  8***********************96 PP
2zf-CCCH32.12e-10273297126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C  f++ G C +G++C+FaHg
  Aradu.EHA06 273 FKTKICEKFSK-GSCTFGEKCHFAHG 297
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.5123981IPR000571Zinc finger, CCCH-type
PfamPF146081.26878No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-14117149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8117149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507119147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016119146IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6121146IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-14177252IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-15180251IPR004088K Homology domain, type 1
SMARTSM003226.5E-10180250IPR004087K Homology domain
PROSITE profilePS5008413.733181245IPR004088K Homology domain, type 1
PfamPF000135.2E-10183246IPR004088K Homology domain, type 1
CDDcd001056.10E-12185246No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15270303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8272302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549272299IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6272298IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8273297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDRKRGRHEH PFNGTGNGAS KKFRPPSASE MESFPTGLGS KLKPCTKFFS NLKLRKYSLM  60
LNLSTSGCPF GEGCHFLHYV PGGIKAVQMM NAGSNPALPQ VSRTPPVPPS FPDGSSPPMV  120
KTRLCNKYNS SEGCKFGDKC HFAHGEWEIG KPTMPSYEDR QRIGGRVETP VHGAAAGFGA  180
SATAKISINA SLAGAVIGKN GINSKQICRV TGAKLSIREH DSDPNLKNIE LEGSFDQIKQ  240
ASSMVHELIL NVSSAAGPAK KNVTSYGPGS NNFKTKICEK FSKGSCTFGE KCHFAHGIEE  300
LRKSGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EHA06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942339.10.0zinc finger CCCH domain-containing protein 44
RefseqXP_025621057.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-100C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A444XUN60.0A0A444XUN6_ARAHY; Uncharacterized protein
STRINGXP_004497409.11e-154(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-71C3H family protein