PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EI58K
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 514aa    MW: 53573.9 Da    PI: 7.6617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EI58KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-053557123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aradu.EI58K 35 FVCEICNKGFQRDQNLQLHRRGH 57
                 89*******************88 PP
2zf-C2H211.20.0012111133123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Aradu.EI58K 111 WKCDKCSKKYAVQSDWKAHSKIC 133
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-73457No hitNo description
Gene3DG3DSA:3.30.160.601.7E-53457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9493557IPR007087Zinc finger, C2H2
PfamPF121718.2E-53557IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0173557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM0035519076106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-499132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-7106131No hitNo description
SMARTSM00355150111131IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MPVDLDNVST ASGEANPDAE VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  60
WKLRQRSSKE VKKRVYVCPE PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY  120
AVQSDWKAHS KICGTREYKC DCGTLFSRRD SFITHRAFCD ALAEESARSQ THSQTTQSQI  180
GVKVSSESDS KAVNAESSSP QPTPPPPATT PAPAPPPPPP PVQPEAPPLP ATTTTTTTTQ  240
PNSVVVPLVL QTQNPELPEN SPQIIEEPQA NTALNGSCSS STSSTSNGGT SSSVFASLFA  300
SSTASGNLQS QTPPAFTDLV RAMGPPDHPT DLPGPSSSEP ISLCLATNHG SSIFGTGGQE  360
RRQYAPPPQP TMSATALLQK AAQMGAAATN ASLLRGLGIV SSSASSSPAQ QDGLQWGQQP  420
AEPESASVPA GLGLGLSFDS GSGLKELMMG TPSMFGPKHT TLDFLGLGMA AGGTPGGGLS  480
ALITSIGGGL DVSAAAAASF GNGEFSGKDI GRST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35107173369Zinc finger protein JACKDAW
5b3h_F3e-35107173369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EI58K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-122AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964045.20.0LOW QUALITY PROTEIN: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-165IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A444Z9X70.0A0A444Z9X7_ARAHY; Uncharacterized protein
STRINGGLYMA01G38290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]