PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EJ1U5
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 428aa    MW: 49745.5 Da    PI: 7.2124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EJ1U5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1447.5e-14199285191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fY+++++  GF vrk    k  ++g+ ++r     + g r+e++ +  +++r +r+et t+C akl + +++ +++w+v k+ l+HnHel+p
  Aradu.EJ1U5 199 DFYSKFGRCHGFGVRKGDYGKD-EEGNLIRR-----RAGLRDEKHLNrLDRKRGHRPETMTNCLAKLSIYLDReNSTWKVRKVILDHNHELTP 285
                  6****************98888.55545555.....567777766664567889*****************999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-12199285IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.211375413IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-4388415IPR006564Zinc finger, PMZ-type
PfamPF044343.5E-4390408IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MHHIHEIPHR VVFTNSGSNY MNVLNVGASG FTIRLDRSGI GGFRHCRCRG LGEGDRFFQL  60
LSISYAAKEW STYVSNLDIM IRLWKGMDNV LLSNEWFANK CCGMHECIAD FQDFEIGFYV  120
LAIDFDQMEF TKGNKGCDTM EGSQREEGCR PDEELDDACG GDSMNGVSDE YPSDYAYVFG  180
LSEQDIIRKV FRSEERAYDF YSKFGRCHGF GVRKGDYGKD EEGNLIRRRA GLRDEKHLNR  240
LDRKRGHRPE TMTNCLAKLS IYLDRENSTW KVRKVILDHN HELTPRRMVH MIPKFRLREY  300
RNNELVAQFN SIYSTPVLTT CLDPIERCAA DVYTRAIFVL VKKEIDGVGA INFVSKRRVS  360
TTMVYTMEEY GHPGHNIVTL FDRTMTRMEC QCRFWEKEGF PCRHIFFVMK HEHLKDIPNP  420
VEEGRQGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EJ1U5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020987336.11e-111protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025613574.11e-113protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025665440.11e-113protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445C5D31e-151A0A445C5D3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2367223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5