PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.F1I05

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 529aa MW: 60360.5 Da PI: 7.9983

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.F1I05	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.4e-24	56	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY++Y++ GF +r+ k+ k+ r+gei+++t+ C++eg+r+++ + ++++r+++++tr+gC+a++++k++ + w+v +++ eHnH+l p Aradu.F1I05 56 RFYEQYSRAKGFAMRQGKKMKN-RKGEIVRYTYLCNREGFRHRKWLQmQDRKREHKVVTRCGCQAEMRIKRKAdSTSWYVCRFVDEHNHDLLP 147 5***************9999.7788***********998775788889999***********9899************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-22	56	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.633	300	336	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.1E-5	311	338	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.6E-6	312	332	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MSSCSRMVHE LDAEDEENFN VSEDSENCDA TETLVDTGME AEILEMEFAN SDEACRFYEQ 60 YSRAKGFAMR QGKKMKNRKG EIVRYTYLCN REGFRHRKWL QMQDRKREHK VVTRCGCQAE 120 MRIKRKADST SWYVCRFVDE HNHDLLPAKF VSYLPAYRKI SDVDVAHIES LRQVGISIPK 180 IYESIAAQAG GFNLVSFTKR DMYNVRYGIL EFVTNFQRCV DFLRNNEEEL DFRSLYGSPV 240 LQTQFPELEK SGALNYTKEI FVRFRDALKR SVRITIVECN KLEDRTVYVT QKYRRPQFQW 300 TVAHHFREDS FFCSCLRFES FGLPCVHILA VLVQLDIGCL PKSIVLKRWS KTAKVELEGS 360 SLMNEEGDAN AVYKVRMGAF LQHCKRLARV ACIRENDFKS SLEKIVEETV FLEMKNGVGT 420 AGRCSVDGAE EGVRDPVTVQ SEGTGRGQEP FGCRGRKRRK CSTCGVVGHR RTHCPSGPPS 480 QPTCSQDPTE DIVAGDEDQS QRGSKTVRVI ASPLTDNYSP AGGVHVVGK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MSSCSRMVHE LDAEDEENFN VSEDSENCDA TETLVDTGME AEILEMEFAN SDEACRFYEQ  60
YSRAKGFAMR QGKKMKNRKG EIVRYTYLCN REGFRHRKWL QMQDRKREHK VVTRCGCQAE  120
MRIKRKADST SWYVCRFVDE HNHDLLPAKF VSYLPAYRKI SDVDVAHIES LRQVGISIPK  180
IYESIAAQAG GFNLVSFTKR DMYNVRYGIL EFVTNFQRCV DFLRNNEEEL DFRSLYGSPV  240
LQTQFPELEK SGALNYTKEI FVRFRDALKR SVRITIVECN KLEDRTVYVT QKYRRPQFQW  300
TVAHHFREDS FFCSCLRFES FGLPCVHILA VLVQLDIGCL PKSIVLKRWS KTAKVELEGS  360
SLMNEEGDAN AVYKVRMGAF LQHCKRLARV ACIRENDFKS SLEKIVEETV FLEMKNGVGT  420
AGRCSVDGAE EGVRDPVTVQ SEGTGRGQEP FGCRGRKRRK CSTCGVVGHR RTHCPSGPPS  480
QPTCSQDPTE DIVAGDEDQS QRGSKTVRVI ASPLTDNYSP AGGVHVVGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.F1I05

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986721.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A445ADU5	0.0	A0A445ADU5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11042	2	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-20	FAR1-related sequence 5