PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F2Q1Q
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 528aa    MW: 58642.3 Da    PI: 6.5359
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F2Q1QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.51.7e-15389428241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  ++k+CnCkkskClk+YCeCfaa+++C+ +C+C++C+Nk +
  Aradu.F2Q1Q 389 DCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLD 428
                  689**********************************976 PP
2TCR50.83.3e-16470509140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnCkks+C+kkYCeCf+ag+ Cs +C+C+ CkN+ 
  Aradu.F2Q1Q 470 RHKRGCNCKKSSCQKKYCECFQAGVGCSINCRCDTCKNTF 509
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-15388429IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.326389510IPR005172CRC domain
PfamPF036384.4E-11391426IPR005172CRC domain
SMARTSM011141.4E-14470511IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-11472508IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
DSPVFNFLNG LSPIKTEKPA QIGQTFSSLS FPSPPRAFAS PNLTSFKESK VLKRHNPFGK  60
SSDVAIADSF HPYHNSRESQ GNFHDGISAV DDSIALPGEH TNFSAEIPQA LKYNNWGNPG  120
YDPSHEDNSL DSIEVLNQES GEFDPKGQEL EHWDNLISGD TDFFVFNSPN EAAAFKDIMQ  180
KPDSHLMPLV PESSIYNGLS DDSKAKIEDY RPEPLAVTDQ MQDKHYVAMT SNTKEKADAE  240
FASVMNHSKR RRCLDFETAS VQRKNSDHNL KSDSLVHSNE KQLVAAKCNS SSQQCTMPAV  300
GLDLNALAAL KGDKKVISND NWPCEIHVNL PSCTSVQIYT SHEHHDPLAV EVDSSDIGPQ  360
PVEDSSHASD FTVDEDVNQN SPQKKTHGDC KRCNCKKSKC LKLYCECFAA RTYCTGNCSC  420
KNCHNKLDHK DEVLQARKQI ESRNPLAFTP KVIPEPEIGN DPNKTPAPSR HKRGCNCKKS  480
SCQKKYCECF QAGVGCSINC RCDTCKNTFG RKDGELSLLL QIKYKLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1739150712120Protein lin-54 homolog
5fd3_B2e-1739150712120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F2Q1Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025702743.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A445D7930.0A0A445D793_ARAHY; Uncharacterized protein
STRINGGLYMA01G44670.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-81TESMIN/TSO1-like CXC 2