PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.F2TC9

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 374aa MW: 44189.6 Da PI: 9.4281

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.F2TC9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.5	7e-16	27	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY+ Y+k +GF ++++++++ ++i+++ vCs+eg+ +++ ++ + +t+++ +C a++ v+ k g w ++k+ l+H+H+++p Aradu.F2TC9 27 KFYKYYSKLAGFFTKIKNTTQD--GDKIKNQLIVCSREGRWKSKISS---TLKTNPSAGLNCSARIYVQIIKdVGLWTISKVILNHSHPCCP 113 6*************987766..8889*********999877...999*************9989*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-13	27	113	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.506	268	304	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MQTSCVVDEK FVPKVRIIFK TLEEARKFYK YYSKLAGFFT KIKNTTQDGD KIKNQLIVCS 60 REGRWKSKIS STLKTNPSAG LNCSARIYVQ IIKDVGLWTI SKVILNHSHP CCPDQAEMLK 120 QHRELISVWF AELYEDRHIW ISVYLDHHFW TGMRSTQRSE NMHSFFNKFI TRNSSLRQFM 180 KQYDNFLASR EQAEREFDAA DFHIVIPCTT KSAIEAQFQR VYTHEKFREV QAQFRGKVNC 240 ITRSMHFTLG FTTYEVIEQV SNSTFNKFVV TYDTVSQDVK CHCLLFESRG ILCHHSLSVL 300 SFEPVDNVAP KYILERWSKN RKRRHRHIKS SQDELVLEPR SKRFNELVFR SHNICEFASE 360 YEELTGILHR AFDK

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MQTSCVVDEK FVPKVRIIFK TLEEARKFYK YYSKLAGFFT KIKNTTQDGD KIKNQLIVCS  60
REGRWKSKIS STLKTNPSAG LNCSARIYVQ IIKDVGLWTI SKVILNHSHP CCPDQAEMLK  120
QHRELISVWF AELYEDRHIW ISVYLDHHFW TGMRSTQRSE NMHSFFNKFI TRNSSLRQFM  180
KQYDNFLASR EQAEREFDAA DFHIVIPCTT KSAIEAQFQR VYTHEKFREV QAQFRGKVNC  240
ITRSMHFTLG FTTYEVIEQV SNSTFNKFVV TYDTVSQDVK CHCLLFESRG ILCHHSLSVL  300
SFEPVDNVAP KYILERWSKN RKRRHRHIKS SQDELVLEPR SKRFNELVFR SHNICEFASE  360
YEELTGILHR AFDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.F2TC9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025692433.1	1e-151	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444ZLV2	0.0	A0A444ZLV2_ARAHY; Uncharacterized protein
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-33	far-red elongated hypocotyls 3