PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.F6LF0

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 209aa MW: 23795 Da PI: 5.6692

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.F6LF0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4.2e-21	81	141	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e++ +l +++e++V++WFqNrRa+ k+ Aradu.F6LF0 81 RQRWTPTPLQLQILERIFDEgNGTPNKQKIKEITLELgqhgQISETNVYNWFQNRRARSKR 141 89***************99************************************97 PP
2	Wus_type_Homeobox	100.8	9.7e-33	80	143	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tPnk++i++it eL ++G+i+++NV++WFQNr+aR+++kq Aradu.F6LF0 80 ARQRWTPTPLQLQILERIFDEGNGTPNKQKIKEITLELGQHGQISETNVYNWFQNRRARSKRKQ 143 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-17	77	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.787	77	142	IPR001356	Homeobox domain
SMART	SM00389	3.1E-14	79	146	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-18	80	143	IPR009057	Homeodomain-like
Pfam	PF00046	6.5E-19	81	141	IPR001356	Homeobox domain
CDD	cd00086	9.64E-15	81	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEAEQATSGA NNGIGSLYMK VMTDEQLEML RQQISVYATI CDRLVEMHKS ITTQQDLAGM 60 RLGNLYCDPL MACSGHKITA RQRWTPTPLQ LQILERIFDE GNGTPNKQKI KEITLELGQH 120 GQISETNVYN WFQNRRARSK RKQLLPSQNN LEAEADVEVE SPKEKKMPEI QETIHQVPSY 180 ENLSHSPDIG FEQLMSKLET GGCYGSYFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.F6LF0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM502261	0.0	KM502261.1 Arachis hypogaea wuschel-related homeobox 13B2 (WOX13B2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934106.1	1e-157	WUSCHEL-related homeobox 8
Refseq	XP_016167316.1	1e-157	WUSCHEL-related homeobox 8
Refseq	XP_025612418.1	1e-157	WUSCHEL-related homeobox 8
Refseq	XP_025666212.1	1e-157	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0H3Y991	1e-156	A0A0H3Y991_ARAHY; Wuschel-related homeobox 13B1
STRING	XP_007136031.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-72	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]