PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F9XMM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 417aa    MW: 48154.8 Da    PI: 9.0282
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F9XMMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.3e-1759145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++ + +   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.F9XMM  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISL---TKKMNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 145
                  6***************998776..8889**************99887...8999999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1459145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.359312348IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4314345IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016323350IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDHSTSDCQL NPSEVDYEFE SNEVPKVYYI RHDWPLSVVD DELVPKVGMT FTTLEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISLTKKMNLT AGLNCPARIY  120
IHTLKDVGAW IISKVVLDHS HPCCPSKAEM LKQHKELSMS IRRTIENNEE AGIRPRKTYQ  180
SFVAATGDRH IWAPIYLDHH FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG  240
SREQAERESD AADFHTVIPC ATKSSIEAQF QDAYTHAKFR EVQAKGELHH QIKEFRSRLF  300
NIRISSSIFN KFVVTYDSVA AEVKCQCLLF ESRGILCRHV LSVLSFEQVS QVSPRYILER  360
WSKKVKRRHT HIKSSHDETL MEPRSKRFDQ LIFRSQNICE FASELGGADC NSAPCVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F9XMM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-128protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444X8170.0A0A444X817_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-30far-red elongated hypocotyls 3