PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.FB5A8

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 187aa MW: 20941.8 Da PI: 8.3382

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.FB5A8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	226.6	6.7e-70	7	169	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + +eq+Cy+ CnfCn +lavsvP tslf +vtvrCGhCt+l svn+a a q l+ ++ ++ + +e + ++n+++n+ ++s+ ++ s Aradu.FB5A8 7 DAGPEQLCYIPCNFCNIVLAVSVPCTSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDL---QGPGQCNQEYRI-DTNINMNNGGSSSKCNNSSRLAS 100 6679*******************************************9999999884...444445555554.55677776666665555555444 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Aradu.FB5A8 101 MRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 169 5666778888899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-71	10	169	IPR006780	YABBY protein
SuperFamily	SSF47095	5.37E-8	114	163	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	116	163	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSSCSMDAGP EQLCYIPCNF CNIVLAVSVP CTSLFDMVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDLQGPGQ CNQEYRIDTN INMNNGGSSS KCNNSSRLAS MRAPTNHVTQ ERAVNRPPEK 120 RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEEKHLMSRA 180 APALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.FB5A8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935977.1	1e-140	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	6e-79	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A445EME8	1e-135	A0A445EME8_ARAHY; Uncharacterized protein
STRING	GLYMA17G12200.1	1e-111	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-78	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]