PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FD8M7
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 92aa    MW: 10820.2 Da    PI: 4.81
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FD8M7genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-113761798
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  lp+kf +++g+    +  + l+  +  +W++    ++k+g++ ++kGW+eF+    L+ g   vF   g  + +  v++f+
  Aradu.FD8M7  3 KLPNKFSKKYGNG--FPNPVYLKPADDTEWKIVW--TNKDGEIQFEKGWREFAAYYSLENGHLYVFN--G--TSKIEVQIFD 76
                 59********766..4556***************..*******************************..4..3345788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.646178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-12385IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-8476No hitNo description
PfamPF023622.8E-8476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MQKLPNKFSK KYGNGFPNPV YLKPADDTEW KIVWTNKDGE IQFEKGWREF AAYYSLENGH  60
LYVFNGTSKI EVQIFDMSCL EIEYPSKDLI ND
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FD8M7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020969385.14e-53B3 domain-containing transcription factor VRN1-like isoform X3
RefseqXP_020989110.15e-53B3 domain-containing protein LOC_Os12g40080
RefseqXP_025624981.15e-53B3 domain-containing protein LOC_Os12g40080 isoform X1
TrEMBLA0A445B0R65e-52A0A445B0R6_ARAHY; Uncharacterized protein
STRINGGLYMA09G20150.15e-30(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-12B3 family protein