PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FER0N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 252aa    MW: 28683.3 Da    PI: 9.8857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FER0NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-172169148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd++++ G g +W++ ++  g++R++k+c++rw +yl
      Aradu.FER0N 21 KGPWTPEEDRILVDYINKNGHGsNWRALPKIAGLNRCGKSCRLRWTNYL 69
                     79*********************************************97 PP
2Myb_DNA-binding58.61.5e-1875119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ 
      Aradu.FER0N  75 RGKFSQEEEKLIINLHQLLGNK-WSAIASHLP-GRTDNEIKNFWNTN 119
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3631669IPR017930Myb domain
SuperFamilySSF466891.69E-3018116IPR009057Homeodomain-like
SMARTSM007172.4E-132071IPR001005SANT/Myb domain
PfamPF002491.1E-152169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-232276IPR009057Homeodomain-like
CDDcd001673.39E-102369No hitNo description
PROSITE profilePS5129425.98370124IPR017930Myb domain
SMARTSM007171.5E-1774122IPR001005SANT/Myb domain
PfamPF002491.7E-1775120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2777124IPR009057Homeodomain-like
CDDcd001673.65E-1377120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKTFVKMGRS RSGYDESGLK KGPWTPEEDR ILVDYINKNG HGSNWRALPK IAGLNRCGKS  60
CRLRWTNYLR PDIKRGKFSQ EEEKLIINLH QLLGNKWSAI ASHLPGRTDN EIKNFWNTNL  120
RKKLLRMGLD PVTHRPRLDH NHNHNQLQLL SNLQHLLLAA NILNNNNNNN ALLRLNESML  180
QNLICSNDSF PCQNQPNFQN FEAPPHDDNV NNNNEKVVVD GTNSSSPTTP LNCYSLPNLV  240
SASSPHHACS NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261912425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FER0N
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029153194.11e-138transcription factor MYB53-like
SwissprotQ9S9Z22e-73MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A445A7F62e-91A0A445A7F6_ARAHY; Uncharacterized protein
STRINGXP_007131513.12e-91(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-72myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]