PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FU6A6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 521aa    MW: 59433.3 Da    PI: 8.8041
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FU6A6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.8e-1859144190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  kfY++YAk vGFs+r++ ++++   +ei+++  +Cs+egk +++ ++   +++t+++   +C+a++ ++  k  g w ++k++l+H+H+++
  Aradu.FU6A6  59 KFYRNYAKAVGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISS---TEKTNPTAGLNCHARIYIQTLKdVGAWIISKVVLDHSHPCC 144
                  6***************998776..8889**************99887...8999**************998879**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1559144IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.235308344IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4318341IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4319346IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEFLTW CIVQPLSVVD DELVSKVGMT FTTLEDAGKF  60
YRNYAKAVGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK ISSTEKTNPT AGLNCHARIY  120
IQTLKDVGAW IISKVVLDHS HPCCSSKAEM LKQHKELSMS IRHTIDNNEE ADLYEDRHIW  180
VPIYLDHHFW AGMRSTQKSK SIHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQAERESDAA  240
DFHTVIPCAT KSSIEAQFQD AYTHAKYREV QAQFRGKANC ITRLKNSALG YSVYEVGEQV  300
SSSIFNKFMV TYDSVAAEVK CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK  360
VKRRHTHIKS SHDEPLMEPR SKRFDQLVFR SQNICEFASE SEELTVILHR AYDNIMAEME  420
SLKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR LGSKLDKQIA NATKKKKTKV  480
LNEINLFDAA SAVHSNSSQY QGHVMNNQFR VLAAGNNSLG V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FU6A6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-35far-red elongated hypocotyls 3