PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.G1834

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 211aa MW: 24672.6 Da PI: 5.0061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.G1834	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	92	183	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk+ GFs rks+ +++ +n+ +t++ fvC ++g+r+ +++ ++++r++r++tr+gC a+++v+ ++ +g+w v+ +++eHnHe+ Aradu.G1834 92 SFYNLYAKMNGFSARKSRIRRNVNND-VTQQAFVCFRQGFRDLYSDNdaARRKREPRPTTRCGCGAEMRVHIHEeTGRWIVSYFQEEHNHEML 183 5******************96655.**********98877766788999************9999*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-22	92	183	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAGLEDFCAE QEAPLYSEGM NVLHDLDPQE RTLEDVSDCV SDSDEYFGDN FYDDWDNRAI 60 NGIADLQTVK FKELTADQIR RLHFPDRSVA FSFYNLYAKM NGFSARKSRI RRNVNNDVTQ 120 QAFVCFRQGF RDLYSDNDAA RRKREPRPTT RCGCGAEMRV HIHEETGRWI VSYFQEEHNH 180 EMLDDMLTFM LPGHRKMNSA AIDQMNMMLK V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.G1834

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020991221.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A444ZLL6	1e-150	A0A444ZLL6_ARAHY; Uncharacterized protein
STRING	AES67962	1e-31	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-17	FAR1-related sequence 5