PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.G1BFV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 260aa MW: 29231.5 Da PI: 6.2571

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.G1BFV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.5e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Aradu.G1BFV 77 RQRWTPTSVQLQILERIFDQgTGTPSKEKIKEITAELskhgQISETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	103.5	1.4e-33	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq Aradu.G1BFV 76 SRQRWTPTSVQLQILERIFDQGTGTPSKEKIKEITAELSKHGQISETNVYNWFQNRRARSKRKQ 139 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-17	71	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	73	138	IPR001356	Homeobox domain
SMART	SM00389	2.3E-14	75	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-18	75	141	IPR009057	Homeodomain-like
CDD	cd00086	7.08E-14	77	139	No hit	No description
Pfam	PF00046	3.2E-19	77	137	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MYVKVMTDEQ LETLRKQIAV YATICEKLIE MHKTLSAQQD LAGKRLEKKD GVDGETGLGS 60 MYCDPLMASS GHKITSRQRW TPTSVQLQIL ERIFDQGTGT PSKEKIKEIT AELSKHGQIS 120 ETNVYNWFQN RRARSKRKQQ NVAASNNTNT NTESEVETEV DSKDKKTKPE EFQSQQSLAN 180 VAAQNVCFHN RDLPYLNPES NKSDSIFPSD GSLTSTSNFD HMPVFNGMIA NSRSDYLAGK 240 MEAPDSYNIY HEGGDYNITG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.G1BFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025622834.1	0.0	WUSCHEL-related homeobox 13
Refseq	XP_025622835.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	2e-79	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A445B8F4	0.0	A0A445B8F4_ARAHY; Uncharacterized protein
STRING	GLYMA18G52491.1	1e-132	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-78	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]