PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G26I2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 253aa    MW: 29000.4 Da    PI: 6.6748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G26I2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv  v ++G + W+ Ia+  g++Rt+k+c++rw +yl
      Aradu.G26I2 20 KGPWTEQEDLKLVSFVGLFGDRKWDFIAKVSGLNRTGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding47.93.1e-1573118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++l +d++ ++G++ W++Iar+++ gRt++++k+++++++
      Aradu.G26I2  73 RGKLTPFEEKLVLDLHSKWGNR-WSRIARKLP-GRTDNEIKNYFRTHM 118
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-201270IPR009057Homeodomain-like
PROSITE profilePS5129424.7751571IPR017930Myb domain
SuperFamilySSF466891.8E-2818114IPR009057Homeodomain-like
SMARTSM007171.4E-141969IPR001005SANT/Myb domain
PfamPF002493.0E-152067IPR001005SANT/Myb domain
CDDcd001672.80E-102267No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2271121IPR009057Homeodomain-like
PROSITE profilePS5129418.5972122IPR017930Myb domain
SMARTSM007173.9E-1372120IPR001005SANT/Myb domain
PfamPF002493.2E-1373117IPR001005SANT/Myb domain
CDDcd001673.17E-980118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGKMVNEEQQ KQSQKQEFRK GPWTEQEDLK LVSFVGLFGD RKWDFIAKVS GLNRTGKSCR  60
LRWVNYLHPG LKRGKLTPFE EKLVLDLHSK WGNRWSRIAR KLPGRTDNEI KNYFRTHMRK  120
KAQEEKRALA SPSSSSCHSS LSSNNNNNQA VDSHASKKAG EESFYDTGGP VMTVDCSTDL  180
KEEEGFSMDD IWKDIELCEE KNIVVYDGNK SEEGCNFSSP PSWEYSSDPL WVMDEQSVLF  240
PTSDPYFSSF LTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26171221105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-261712255159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-261712255159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G26I2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086690.0KF208669.1 UNVERIFIED: Arachis hypogaea putative MYB-related protein 15-like (MYB15) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935685.20.0transcription factor MYB48 isoform X1
RefseqXP_020964248.10.0transcription factor MYB48 isoform X2
RefseqXP_025613946.10.0transcription factor MYB48 isoform X1
RefseqXP_025671646.10.0transcription factor MYB48 isoform X2
SwissprotQ9LX828e-82MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A444Y8250.0A0A444Y825_ARAHY; Uncharacterized protein
TrEMBLA0A445BW030.0A0A445BW03_ARAHY; Uncharacterized protein
STRINGGLYMA15G04620.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-83myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]