PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.G4IDA

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 256aa MW: 28681.9 Da PI: 9.6544

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.G4IDA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.3e-30	84	142	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ Aradu.G4IDA 84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSCEHNHP 142 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	78	144	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	80	144	IPR003657	WRKY domain
SMART	SM00774	3.6E-35	83	143	IPR003657	WRKY domain
PROSITE profile	PS50811	32.168	84	144	IPR003657	WRKY domain
Pfam	PF03106	9.1E-26	85	142	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDSKLRNRSS RSSRNLYMKE QEDNDGSDSP PSNSTLFNID ALVTSSPSSS SKRRRGVEKR 60 VVHIRIKEGE GPRLKGENNT PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 120 VERSRVDPTM LVVTYSCEHN HPWPSSRNHN RSSTKKPQPS AEDLLVDPVE PDLEGHDSII 180 HDLGWFRDIS GALTPSLPAV LDSPIFSGYD DADVAASVVL PMGDDEESLF ADQDRKKKKR 240 KKRREMGTSG DEKGNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-20	85	145	18	80	Disease resistance protein RRS1
5w3x_D	3e-20	85	145	18	80	Disease resistance protein RRS1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	239	RKKKKR
2	234	244	RKKKKRKKRRE
3	235	240	KKKKRK
4	235	242	KKKKRKKR
5	235	243	KKKKRKKRR
6	237	241	KKRKK
7	237	243	KKRKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.G4IDA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958125.1	1e-169	probable WRKY transcription factor 65
Swissprot	Q9LP56	5e-58	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A444ZRG0	1e-148	A0A444ZRG0_ARAHY; Uncharacterized protein
STRING	GLYMA08G12460.1	7e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-57	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]