PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G8P6Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21714.4 Da    PI: 10.3479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G8P6YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.3e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs +gkl+ +ss
  Aradu.G8P6Y  9 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSS 59
                 79***********************************************96 PP
2K-box86.45.8e-296313924100
        K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  Lk+++e L+r+qR+++G+dL+ LslkeLq+LeqqL+++lk++Rs++n+l++e i+ lqkkek lqe+n+ L kk++e
  Aradu.G8P6Y  63 LKARVEVLERNQRNFMGQDLQCLSLKELQNLEQQLDSALKQVRSRRNQLIYEDISVLQKKEKTLQEQNTLLAKKIKE 139
                  89************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.328161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-29273IPR002100Transcription factor, MADS-box
CDDcd002651.26E-36259No hitNo description
PRINTSPR004044.0E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.22653143IPR002487Transcription factor, K-box
PfamPF014868.8E-2463137IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KANEISVLCD AEVALIVFSC KGKLFQFSSD  60
PWLKARVEVL ERNQRNFMGQ DLQCLSLKEL QNLEQQLDSA LKQVRSRRNQ LIYEDISVLQ  120
KKEKTLQEQN TLLAKKIKEK EKAITQQAQL ELQNNFMDLT PFVVAPQSSE MNIGLVLYIF  180
LINFMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19174174MEF2C
5f28_B1e-19174174MEF2C
5f28_C1e-19174174MEF2C
5f28_D1e-19174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G8P6Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988998.11e-113truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S76e-76AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A445B3R91e-102A0A445B3R9_ARAHY; Uncharacterized protein
STRINGEOY221358e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]