PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GFS4B
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 253aa    MW: 29814.4 Da    PI: 8.3965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GFS4BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.2e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++v+++G g+W+++a+  g++R++k+c++rw +yl
      Aradu.GFS4B 14 KGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.68e-1568111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  T+ E+ ++ ++++ lG++ W+tIar+++ gRt++++k++w+++
      Aradu.GFS4B  68 GQLTPLEEGIIFELHAILGNK-WSTIARYLP-GRTDNEIKNYWRTH 111
                      667999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.566965IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-231064IPR009057Homeodomain-like
SuperFamilySSF466896.74E-3111108IPR009057Homeodomain-like
SMARTSM007171.5E-161363IPR001005SANT/Myb domain
PfamPF002491.1E-171461IPR001005SANT/Myb domain
CDDcd001671.38E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2265115IPR009057Homeodomain-like
PROSITE profilePS5129418.8166116IPR017930Myb domain
SMARTSM007173.2E-1266114IPR001005SANT/Myb domain
PfamPF002492.3E-1267111IPR001005SANT/Myb domain
CDDcd001671.68E-871112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVVMIMGSER GWKKGPWTHE EDKLLTEYVT LHGEGRWSSV AKFTGLNRSG KSCRLRWVNY  60
LRPGLKKGQL TPLEEGIIFE LHAILGNKWS TIARYLPGRT DNEIKNYWRT HFKKKEDSKH  120
NKKLKERRSK VTKEQVIMED TNKSNNNENT KSYDDETKEN YYNDQHNNMG FIYPNNNNPT  180
MLEQQQSFPL MHQDYLSSPS WPDTTTADYH ALWFSLWDFD VPQGFEEHVN NLTKYVLPNQ  240
ATFGDVFHNT FLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141187110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GFS4B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962280.20.0transcription factor WER
TrEMBLA0A444WN261e-171A0A444WN26_ARAHY; Uncharacterized protein
STRINGXP_007139421.11e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-66myb domain protein 121