PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.GG6CV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 452aa MW: 49862.6 Da PI: 9.5972

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.GG6CV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	54	74	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F r nL+ H r H Aradu.GG6CV 54 CETCGKGFQRDQNLQLHRRGH 74 *******************88 PP
2	zf-C2H2	12	0.00062	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Aradu.GG6CV 128 WKCDKCSKRYAVQSDWKAHSKIC 150 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.593	52	74	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.9E-5	52	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.03E-7	52	74	No hit	No description
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.7E-4	116	149	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.03E-7	123	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MRILENMDHG ELSNGFPHNQ NQNPTTTPPP SSNNNLPSLK RKRNLPGNPG KFLCETCGKG 60 FQRDQNLQLH RRGHNLPWKL KQRTNKEPKK RVYVCPEKTC VHNHPSRALG DLTGIKKHFC 120 RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA 180 EETARVNAAS SINNSTLGAN NSNNNIIGYN NMMIGTSMAP HHNNNNNMAT QFASICNKPI 240 PFPEEARNNQ TTTRGLSLWM DHHHHHRQEA TMATNNNNYH LNWVFGSKIS TNPSQDLSSN 300 TTITSTTTTS LSVPSLYSSQ HQPHQTCASS SSANMSATAL LQKAAQVGAT SCGPSSFLGA 360 LGLKCSNGSG QGQDGNNNKF CGVYGSSLVL TSSSNNINTE PENNELSQML PSKRRHVMPN 420 EESGGGQTRD FLGVGGANHH LPPFINQSLD LI

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MRILENMDHG ELSNGFPHNQ NQNPTTTPPP SSNNNLPSLK RKRNLPGNPG KFLCETCGKG  60
FQRDQNLQLH RRGHNLPWKL KQRTNKEPKK RVYVCPEKTC VHNHPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA  180
EETARVNAAS SINNSTLGAN NSNNNIIGYN NMMIGTSMAP HHNNNNNMAT QFASICNKPI  240
PFPEEARNNQ TTTRGLSLWM DHHHHHRQEA TMATNNNNYH LNWVFGSKIS TNPSQDLSSN  300
TTITSTTTTS LSVPSLYSSQ HQPHQTCASS SSANMSATAL LQKAAQVGAT SCGPSSFLGA  360
LGLKCSNGSG QGQDGNNNKF CGVYGSSLVL TSSSNNINTE PENNELSQML PSKRRHVMPN  420
EESGGGQTRD FLGVGGANHH LPPFINQSLD LI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-35	124	193	3	72	Zinc finger protein JACKDAW
5b3h_F	4e-35	124	193	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.GG6CV

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015932897.1	0.0	zinc finger protein NUTCRACKER-like
Swissprot	Q9ZWA6	1e-120	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A445CGB4	0.0	A0A445CGB4_ARAHY; Uncharacterized protein
STRING	GLYMA12G13810.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4626	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-100	C2H2-like zinc finger protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]