PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GLV35
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 294aa    MW: 34099 Da    PI: 9.6107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GLV35genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed+ l ++v+ +G g W ++a+  g++R++k+c+ rw++yl
      Aradu.GLV35 33 KGAWSRDEDQTLSKYVAIHGEGKWQKVAQNAGLNRCGKSCRQRWLNYL 80
                     79********************************************97 PP
2Myb_DNA-binding49.11.3e-1586130147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  +++E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
      Aradu.GLV35  86 RGDISQDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 130
                      67789*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5312884IPR017930Myb domain
SuperFamilySSF466891.54E-2931127IPR009057Homeodomain-like
SMARTSM007173.0E-153282IPR001005SANT/Myb domain
PfamPF002491.9E-163380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-233487IPR009057Homeodomain-like
CDDcd001672.67E-103580No hitNo description
PROSITE profilePS5129420.71685135IPR017930Myb domain
SMARTSM007174.0E-1685133IPR001005SANT/Myb domain
PfamPF002491.5E-1486131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2488136IPR009057Homeodomain-like
CDDcd001673.22E-1190131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRRNIEDDER RRRKKRKKLK MGRRPCCSKE MNKGAWSRDE DQTLSKYVAI HGEGKWQKVA  60
QNAGLNRCGK SCRQRWLNYL KPGIKRGDIS QDEEDMIIRL HRLLGNRWAL IAKRLPGRTD  120
NEIKNYWNTN LSKKLQQQQQ QWQPPPPSSS SSHKHKNNNL THKHVLVPPQ TPIPRRLKAF  180
HYNNNNNNNN NNNNNNTSSI SPCSDDNSEE ASLTDFLIDI DDNDDDQMLS VTDNDDDHRH  240
NSKLLEEQSN PSSSSLLSSS DQCNNLFMSE KFDPLETLLD VELKRVASFL GLKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-273013524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818ERRRRKKRKKL
2917RRRRKKRKK
31015RRRKKR
41016RRRKKRK
51024RRRKKRKKLKMGRRP
61117RRKKRKK
71118RRKKRKKL
81317KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GLV35
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939186.10.0transcription factor WER-like isoform X1
TrEMBLA0A445BMM81e-158A0A445BMM8_ARAHY; Uncharacterized protein
STRINGGLYMA07G04210.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-51MYB family protein