PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GN6SE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 347aa    MW: 38798 Da    PI: 5.7605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GN6SEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-162976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d+++  G g+W++ ++  g+ R++k+c++rw +yl
      Aradu.GN6SE 29 KGRWTKEEDQILTDYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYL 76
                     79******************************99************97 PP
2Myb_DNA-binding46.77.3e-1582127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+ ++ ++++ +G++ W++Ia++++ gRt++++k++w+++l
      Aradu.GN6SE  82 RGNISIEEEAIITKLHASFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 127
                      678889****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-212079IPR009057Homeodomain-like
PROSITE profilePS5129415.3842476IPR017930Myb domain
SuperFamilySSF466891.38E-2726123IPR009057Homeodomain-like
SMARTSM007176.7E-122878IPR001005SANT/Myb domain
PfamPF002493.9E-142976IPR001005SANT/Myb domain
CDDcd001671.53E-83176No hitNo description
PROSITE profilePS5129424.08277131IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2480131IPR009057Homeodomain-like
SMARTSM007172.0E-1481129IPR001005SANT/Myb domain
PfamPF002494.4E-1382127IPR001005SANT/Myb domain
CDDcd001673.54E-1088127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
AILPVLNCSC RRHRKMGRAP CCDKVGLKKG RWTKEEDQIL TDYIQANGEG SWRALPKNAG  60
LLRCGKSCRL RWINYLRADL KRGNISIEEE AIITKLHASF GNRWSLIASH LPGRTDNEIK  120
NYWNSHLSRK VYSLPAPNDK DTTTCATATA IPKILDTPPK RKGSGKTSRW AMKKNKSTYS  180
PPIQTQTPSS EEEGRGEVSE KMMECEEGSI DDGGVLSFND IMESSCMQQL DDDHQPCGLS  240
TVTTAGVPND DTCPNTTTTT TTTGEASHSN CSSNNSMASG LELDDSYWES VLELNNNSTD  300
ESSWEHSTEA LFNWLWEDHH LDKLGGQHHD DDDHKQNNAM MVDWFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-242713125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GN6SE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968952.10.0transcription factor MYB12
SwissprotQ9FJ071e-70MY111_ARATH; Transcription factor MYB111
TrEMBLA0A445CMP90.0A0A445CMP9_ARAHY; Uncharacterized protein
STRINGXP_004494411.13e-97(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-71myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]