PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.GQN6H

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 238aa MW: 25730.7 Da PI: 9.5528

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.GQN6H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Aradu.GQN6H 93 AWTEEEHRRFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 137 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	1.7E-4	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.565	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.119	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	5.23E-18	88	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	89	140	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-10	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-11	91	136	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-12	93	137	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-9	93	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGRKCSHCGN VGHNSRTCTS SSFLGIRLFG THLLADPSSS SSSPATMMTM NNKYFSMDSL 60 TLFPTTTTTT TTTAAIGYLS DGAPPQDKKK GVAWTEEEHR RFLVGLEKLG KGDWRGISRN 120 FVTTRTPTQV ASHAQKYFLR LANTVNHNKR RSSLFDTNNT PPTTAAAAAA TLSFHFLEQQ 180 QTINNSNKPL LSTETTSESS SSSSSSSSMY NNSVPPPDLD LTLAPPPPPN SSSCFPQL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.GQN6H

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208671	0.0	KF208671.1 Arachis hypogaea putative MYB-related protein 17 (MYB17) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015955235.1	1e-175	transcription factor MYBS3
Swissprot	Q7XC57	5e-46	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A445DUY1	1e-128	A0A445DUY1_ARAHY; Uncharacterized protein
STRING	AES77144	1e-62	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3213	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	4e-55	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]