PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.GQR5U

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 1772aa MW: 199476 Da PI: 4.8033

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.GQR5U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	43	98	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+eL++kl L++rq ++WF+ rR k+kk Aradu.GQR5U 43 PKRQMKTPYQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKK 98 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-18	28	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.12E-16	29	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	39	99	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	41	103	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-16	43	98	IPR001356	Homeobox domain
CDD	cd00086	1.00E-11	44	93	No hit	No description
PROSITE profile	PS50827	16.838	560	619	IPR018501	DDT domain
SMART	SM00571	2.5E-20	560	619	IPR018501	DDT domain
Pfam	PF02791	2.1E-17	561	616	IPR018501	DDT domain
Pfam	PF05066	8.4E-11	706	764	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.7E-9	918	961	IPR028942	WHIM1 domain
Pfam	PF15613	5.7E-13	1097	1169	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1772 aa Download sequence Send to blast
MEGEGGSEGE NNQRRGGTDD NSNENINGSN SKVANSNEGQ SKPKRQMKTP YQLETLEKAY 60 ALETYPSEAM RAELSEKLAL SDRQLQMWFC HRRLKDKKDL PPKKPPKKAV EKVREPEPEP 120 VPDSPVDDHR LGPELGNEDG SGSGSGSSPF TRSESRSVAP RGYYESQQAA LELRAISCVE 180 AQLGGPLRED GPILGIEFDA LPPDAFGAPL ATIAEQQKRP SHAYDSKVYE RHNARPNKAM 240 SRAFHEYQFL RNQAGPRSDG FGQYPQHHLH DPMEGPARNT HFAHGTEQLH RSHATQGHSS 300 RVRILPQQDK QGIPHPSPPQ DDDVASQKQL HTNVVNTGVN SHSTDYQIVG PENPYNPPGG 360 QVSHITTMQI EKKRKSDDAR SAREVEAHEM RIKKELEKQD NLRRKNEERM RKEMERQDRE 420 RRKEEERLMR ERQREEERLR REQKRELERR EKFLLKENLK AEKMRQKEEL RKEKEAERRK 480 AALEKATARR IAKESMELIE DEQLELMELA ASSKGLSSII HLDFDTLQNL ESFRDSLCVF 540 PPKSVKLRKP FAIQPWINSE ENVGNLLMVW KFLITFADIL ELWPFTLDEF VQAFHDYDSR 600 LLGEIHVALL KVIIKDIADV ARTPSTGLGM SQNGAANSGG GHPEIVEGAY AWGFDIRNWH 660 KHLNQLTWPE IFRQLALAAG YGPQLKKRNI TWSYANDKDE GRSCEDIIST RGEGLTVLEL 720 AEKIQKSGLR DLTTSKTPEA SISVALTRDA KLFERIAPST YRVRTAFRKD PADAESILLE 780 ARKKIQIFEN GFLAGEDADE VEREDDIERD DVERYDDVER EEESESEEVD DDPEVDDLLG 840 PSSANKTSVL CDDFSSIGKE SLGHKVELIQ DQFEKDLPEN GTKDVDGSKD AHLPDAITGQ 900 PVITNFEEDN MEIDESKTGE SWVEGLAEGE YSDLSVEERL NALVVLVGVA NEGNSIRVVL 960 EDRLEAANAL KKQMWAEAQI DKIRLRDDNV NKSDFPSING NKVEPQYTSP AVGGNQSPLL 1020 DINIDNNNNN EASPSTAENK KAAVVQNLAM EKPSIGQDYC IGPDNPQTQL SAPYSKRSRS 1080 QLKSYISHMA EEMSVYRSLP LGQDRRHNRY WQFVASASCN DPGSGRIFVE YLDGNWRLID 1140 SEEAFDALFN SLDLRGIRES HLRIMLQKIG SSFKENVRKN AQSANIGSRD ETNIKNEADE 1200 AESSPDCHAL SDSPSSTLCG LNSDTSETSS SFKIELGKSE SEKKGAFRRY QDFQKWMWKE 1260 CYNSSILSAM KYGKMRCKPQ VDICDICLNP YFFEDSHCNC CHRTFPSNNG FNFSKHIFQC 1320 GGKLSKDICI LDCSLPLRTR LLKALLAFIE ASVPSEAFQS TWTEDTRRHW GLKLSKSSSV 1380 EELLQLLTVF ERAIKRDFLS SSFSTTQELL GSSSMSESAF TDPESVAVLP WVPQTTSAVS 1440 LRLSEFDASI SYVQLEKSEH RREKETIEYM KLPSRSNPFK SSRVVEPADL DHDEFMKVRS 1500 APMKIVQSGN KRGRGNSDKG RGKKIAKRMH DSKQDTGRRS VKVTENLSQR LKQQGRGAQG 1560 QSGGRGRRTV RKRRVEKRAV EDLLLGHKAG THSSNIVREP LRNLDEEWDD DEKASPMTSI 1620 HMGAVDNSNS AEEADSDDNA QVAESNDNAQ AADSDENAQE VDSDDNPLEV DSDDNAQAVD 1680 SDDNGQAVEY DQGNWGIGFN NTPNRWSRDV VGMMDEDVEA SDEDNDNNVG LEENEEEESE 1740 GDDVLSEEGS DGIADRVLND DSDSDDSEDS SD

Sequence ? help Back to Top

Protein Sequence Length: 1772 aa Download sequence Send to blast

MEGEGGSEGE NNQRRGGTDD NSNENINGSN SKVANSNEGQ SKPKRQMKTP YQLETLEKAY  60
ALETYPSEAM RAELSEKLAL SDRQLQMWFC HRRLKDKKDL PPKKPPKKAV EKVREPEPEP  120
VPDSPVDDHR LGPELGNEDG SGSGSGSSPF TRSESRSVAP RGYYESQQAA LELRAISCVE  180
AQLGGPLRED GPILGIEFDA LPPDAFGAPL ATIAEQQKRP SHAYDSKVYE RHNARPNKAM  240
SRAFHEYQFL RNQAGPRSDG FGQYPQHHLH DPMEGPARNT HFAHGTEQLH RSHATQGHSS  300
RVRILPQQDK QGIPHPSPPQ DDDVASQKQL HTNVVNTGVN SHSTDYQIVG PENPYNPPGG  360
QVSHITTMQI EKKRKSDDAR SAREVEAHEM RIKKELEKQD NLRRKNEERM RKEMERQDRE  420
RRKEEERLMR ERQREEERLR REQKRELERR EKFLLKENLK AEKMRQKEEL RKEKEAERRK  480
AALEKATARR IAKESMELIE DEQLELMELA ASSKGLSSII HLDFDTLQNL ESFRDSLCVF  540
PPKSVKLRKP FAIQPWINSE ENVGNLLMVW KFLITFADIL ELWPFTLDEF VQAFHDYDSR  600
LLGEIHVALL KVIIKDIADV ARTPSTGLGM SQNGAANSGG GHPEIVEGAY AWGFDIRNWH  660
KHLNQLTWPE IFRQLALAAG YGPQLKKRNI TWSYANDKDE GRSCEDIIST RGEGLTVLEL  720
AEKIQKSGLR DLTTSKTPEA SISVALTRDA KLFERIAPST YRVRTAFRKD PADAESILLE  780
ARKKIQIFEN GFLAGEDADE VEREDDIERD DVERYDDVER EEESESEEVD DDPEVDDLLG  840
PSSANKTSVL CDDFSSIGKE SLGHKVELIQ DQFEKDLPEN GTKDVDGSKD AHLPDAITGQ  900
PVITNFEEDN MEIDESKTGE SWVEGLAEGE YSDLSVEERL NALVVLVGVA NEGNSIRVVL  960
EDRLEAANAL KKQMWAEAQI DKIRLRDDNV NKSDFPSING NKVEPQYTSP AVGGNQSPLL  1020
DINIDNNNNN EASPSTAENK KAAVVQNLAM EKPSIGQDYC IGPDNPQTQL SAPYSKRSRS  1080
QLKSYISHMA EEMSVYRSLP LGQDRRHNRY WQFVASASCN DPGSGRIFVE YLDGNWRLID  1140
SEEAFDALFN SLDLRGIRES HLRIMLQKIG SSFKENVRKN AQSANIGSRD ETNIKNEADE  1200
AESSPDCHAL SDSPSSTLCG LNSDTSETSS SFKIELGKSE SEKKGAFRRY QDFQKWMWKE  1260
CYNSSILSAM KYGKMRCKPQ VDICDICLNP YFFEDSHCNC CHRTFPSNNG FNFSKHIFQC  1320
GGKLSKDICI LDCSLPLRTR LLKALLAFIE ASVPSEAFQS TWTEDTRRHW GLKLSKSSSV  1380
EELLQLLTVF ERAIKRDFLS SSFSTTQELL GSSSMSESAF TDPESVAVLP WVPQTTSAVS  1440
LRLSEFDASI SYVQLEKSEH RREKETIEYM KLPSRSNPFK SSRVVEPADL DHDEFMKVRS  1500
APMKIVQSGN KRGRGNSDKG RGKKIAKRMH DSKQDTGRRS VKVTENLSQR LKQQGRGAQG  1560
QSGGRGRRTV RKRRVEKRAV EDLLLGHKAG THSSNIVREP LRNLDEEWDD DEKASPMTSI  1620
HMGAVDNSNS AEEADSDDNA QVAESNDNAQ AADSDENAQE VDSDDNPLEV DSDDNAQAVD  1680
SDDNGQAVEY DQGNWGIGFN NTPNRWSRDV VGMMDEDVEA SDEDNDNNVG LEENEEEESE  1740
GDDVLSEEGS DGIADRVLND DSDSDDSEDS SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	RRLKDKKD
2	96	107	KKDLPPKKPPKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.GQR5U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020994682.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	A0A445DQX4	0.0	A0A445DQX4_ARAHY; Uncharacterized protein
STRING	GLYMA07G32180.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1