PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.GR1JH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 441aa MW: 51252.4 Da PI: 4.8239

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.GR1JH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.2	5.4e-13	92	160	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 +fY +Y+k+ GFs rksk+ k+ + ei+++ fvC ++g+r e+ + +++++++r etrtgC+a++ Aradu.GR1JH 92 DFYMKYSKSKGFSARKSKTFKN-SSCEIYRQMFVCHRQGFRMEKYYTmEKRKKEPRLETRTGCEARMDHF 160 6***************9998.6777************998856777789**********755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-11	92	159	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.361	242	280	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-4	257	276	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MNEQYQEDDD FNQQEELVSD QDMMDEQNEF EQDFRDEFTE GAFFSESDMS DYILEAAYAV 60 DSVQDITSLK FSENFAEEIG KYHFSTLQLA FDFYMKYSKS KGFSARKSKT FKNSSCEIYR 120 QMFVCHRQGF RMEKYYTMEK RKKEPRLETR TGCEARMDHF QRCVAHMRFN EFNADYESTS 180 GVPVTQNCIE LLERYAVELY TYEIFFFFRP FLSRAGSMRV LNIDNTDDCI KYIVCKHGRP 240 NFTWTVDFRQ EEMIFMCTCL RMESFGIPCE HIVKVLVDRD IREIPRSLVL DRWTKNVKSA 300 LNDPSGFTRD AVVISRQSAL VEFSKQLAAV AAKVPERYEE TRDLIMGLYS SYKAADEGDN 360 QPHSGVARSS NPYVHPTTGG SGQPSKKKKR QRCSVCQMEG HKKTTCPWQK DIDNNIMENE 420 AIGSDDGDMC TEATAELDSD S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MNEQYQEDDD FNQQEELVSD QDMMDEQNEF EQDFRDEFTE GAFFSESDMS DYILEAAYAV  60
DSVQDITSLK FSENFAEEIG KYHFSTLQLA FDFYMKYSKS KGFSARKSKT FKNSSCEIYR  120
QMFVCHRQGF RMEKYYTMEK RKKEPRLETR TGCEARMDHF QRCVAHMRFN EFNADYESTS  180
GVPVTQNCIE LLERYAVELY TYEIFFFFRP FLSRAGSMRV LNIDNTDDCI KYIVCKHGRP  240
NFTWTVDFRQ EEMIFMCTCL RMESFGIPCE HIVKVLVDRD IREIPRSLVL DRWTKNVKSA  300
LNDPSGFTRD AVVISRQSAL VEFSKQLAAV AAKVPERYEE TRDLIMGLYS SYKAADEGDN  360
QPHSGVARSS NPYVHPTTGG SGQPSKKKKR QRCSVCQMEG HKKTTCPWQK DIDNNIMENE  420
AIGSDDGDMC TEATAELDSD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	386	391	KKKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.GR1JH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015931896.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_015955868.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YFB3	0.0	A0A444YFB3_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-14	FAR1-related sequence 5