PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H1RTI
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 453aa    MW: 51604.8 Da    PI: 10.1343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H1RTIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31e-171197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.H1RTI 11 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLNHSHPCCP 97
                 6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-151197IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.333240276IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MTFTTLEDAE KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLN HSHPCCPNKA EMLKQHRKLS MSIRRTIENN  120
EEAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  180
ATKSSIEAEF QDAYTHAKFR EVQAQFRGKA NCIPRLKNST LGYSIYEVGE QVSSSIFNKF  240
AVTYDSVAAK VKCQCLLFES RWILCRHALS VSSFEQVSQV SPIYILERWS KKVKRRHTHI  300
KSSHEEPLME PRSKRFDQLV FRSQNICEFA SKSEELTAIL HRAYDNVMAE MEALKAKRKG  360
TSSLSHEDAN LDSVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD  420
AASVVHSNSS QYQGHVMNNQ FRVLAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H1RTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-26far-red elongated hypocotyls 3