PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H2YS3
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 226aa    MW: 26137 Da    PI: 7.9126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H2YS3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.13.2e-312310053129
          NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v +  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  Aradu.H2YS3  23 LNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPlTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 100
                  3678*************************************9999999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.9511118IPR003441NAC domain
SuperFamilySSF1019411.7E-3820118IPR003441NAC domain
PfamPF023651.2E-152399IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MISELLRSNG VMKYVVYAEV AKLNANEWYF FSFRDRKYAT GFRTNRATTS GYWKATGKDR  60
TVQDPLTQEV VGMRKTLVFY RNRAPNGIKT GWIMHEFRLE TPHMPPKEDW VLCRVFHKSK  120
EENSGKLIMY DSISTHHESS NSMALVSTHH LNPINNHNAM NNFLHHFSSS RDDSQTNNAN  180
NNNNNSPKGY DGYGFIWDHM DLEDHSVPSS DFQVDNNNNN NNIALL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-282111866165NO APICAL MERISTEM PROTEIN
1ut4_B8e-282111866165NO APICAL MERISTEM PROTEIN
1ut7_A8e-282111866165NO APICAL MERISTEM PROTEIN
1ut7_B8e-282111866165NO APICAL MERISTEM PROTEIN
3swm_A9e-282111869168NAC domain-containing protein 19
3swm_B9e-282111869168NAC domain-containing protein 19
3swm_C9e-282111869168NAC domain-containing protein 19
3swm_D9e-282111869168NAC domain-containing protein 19
3swp_A9e-282111869168NAC domain-containing protein 19
3swp_B9e-282111869168NAC domain-containing protein 19
3swp_C9e-282111869168NAC domain-containing protein 19
3swp_D9e-282111869168NAC domain-containing protein 19
4dul_A8e-282111866165NAC domain-containing protein 19
4dul_B8e-282111866165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H2YS3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968039.11e-154protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-42NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A445CPS71e-138A0A445CPS7_ARAHY; Uncharacterized protein
STRINGXP_007162552.11e-84(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.19e-63NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]