PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.HQ3MZ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 139aa MW: 15796.7 Da PI: 8.2065

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.HQ3MZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.6	1.4e-10	62	85	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC +f tG+C+yG++Ck+ H+ Aradu.HQ3MZ 62 QPLCYNFVNTGFCRYGNSCKYLHP 85 58*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-15	4	53	No hit	No description
Pfam	PF06220	6.8E-9	5	39	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	14.962	59	87	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	60	86	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-7	62	86	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-8	63	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-7	64	84	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MPARKFYCDY CDKQFPDTAA DRKRHERGIQ HQQAKARWYD SFKLEQQQQF PSNAPLPQGM 60 PQPLCYNFVN TGFCRYGNSC KYLHPNANNA PHPSMISAPN PSGNVVLQDR TGLSWDNLPP 120 SLQPPPEAGY PSLPFVDWG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.HQ3MZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015939587.1	1e-101	zinc finger CCCH domain-containing protein 3
Refseq	XP_015939589.1	1e-101	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	3e-33	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A445BL81	1e-98	A0A445BL81_ARAHY; Uncharacterized protein
STRING	XP_007145029.1	8e-54	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	6e-35	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]