PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.HQQ60

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 123aa MW: 13683.9 Da PI: 8.1219

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.HQQ60	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	58	91	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg+W +eEd +l ++++++G g+W++ ++ g + Aradu.HQQ60 58 RGKWIAEEDRILTQYIEEHGEGSWRSLPKNAG-LL 91 89**************************9999.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-11	49	87	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.085	53	102	IPR017877	Myb-like domain
Pfam	PF00249	1.1E-6	58	92	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.24E-8	59	122	IPR009057	Homeodomain-like
CDD	cd00167	6.43E-4	60	89	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-4	102	122	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.14	106	123	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MGRAPCCEKV GLKRGRWTAE EDTLHEAITI IILLVGVVSI PSSMMGRAPC CEKVELKRGK 60 WIAEEDRILT QYIEEHGEGS WRSLPKNAGL LSISSSTMGR APCCEKVGLK RGRWTAEEDR 120 ILT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.HQQ60

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015938283.1	4e-25	transcription factor MYB111
Refseq	XP_016172314.1	4e-25	transcription factor MYB111
Refseq	XP_017628554.1	9e-25	PREDICTED: transcription factor MYB12-like
Refseq	XP_025630174.1	4e-25	transcription factor MYB111-like
Refseq	XP_025679220.1	4e-25	transcription factor MYB111-like
Refseq	XP_025703597.1	2e-26	transcription factor MYB111-like
Swissprot	P27898	3e-21	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A445BLB3	2e-26	A0A445BLB3_ARAHY; Uncharacterized protein
STRING	Gorai.007G124000.1	9e-24	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	1e-23	myb domain protein 111

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]