PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HRF9E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 402aa    MW: 46244.5 Da    PI: 6.6887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HRF9EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055106128323
                  ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                  C+   Cgk+F +   L++H   H
  Aradu.HRF9E 106 CSyeGCGKTFIDAGALRKHSHIH 128
                  77779**************7766 PP
2zf-C2H215.74.3e-05133157123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   Cgk F ++s LkrH   H
  Aradu.HRF9E 133 FVCHyeGCGKKFLDSSKLKRHFLIH 157
                  89*******************8877 PP
3zf-C2H221.65.8e-07163187123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk Fs   nL++H++tH
  Aradu.HRF9E 163 FVCPheGCGKAFSLDFNLRSHMKTH 187
                  89**********************9 PP
4zf-C2H215.26.3e-05193217123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp   Cgk++ + + Lk+Hi +H
  Aradu.HRF9E 193 HICPysECGKRYAHEYKLKNHIASH 217
                  68*********************96 PP
5zf-C2H212.90.00034256281123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  y Cp   C k + + + Lk H+++ H
  Aradu.HRF9E 256 YACPyeGCEKAYIHEYKLKLHLKReH 281
                  89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-1399130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741104133IPR007087Zinc finger, C2H2
SMARTSM003550.0032104128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106128IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-8107157No hitNo description
Gene3DG3DSA:3.30.160.603.9E-14131153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0043133157IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.734133162IPR007087Zinc finger, C2H2
PROSITE patternPS000280135157IPR007087Zinc finger, C2H2
SuperFamilySSF576675.78E-13148190No hitNo description
Gene3DG3DSA:3.30.160.603.9E-20154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695163192IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-8178219No hitNo description
Gene3DG3DSA:3.30.160.602.1E-8188219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743193222IPR007087Zinc finger, C2H2
SMARTSM003550.035193217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-5251279No hitNo description
Gene3DG3DSA:3.30.160.607.1E-9252278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66256286IPR007087Zinc finger, C2H2
SMARTSM003550.012256281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEIHYSSSYF ERRPIIRSNA PAAKWVKEWY HHSLLQSNVP FLDMYYANDR RNVPARVPQD  60
VVATGGKCML LRWVREDALK ALQEKEKEPA VPEPEPEPTT EVLFLCSYEG CGKTFIDAGA  120
LRKHSHIHGE RQFVCHYEGC GKKFLDSSKL KRHFLIHTGE RDFVCPHEGC GKAFSLDFNL  180
RSHMKTHSQE NYHICPYSEC GKRYAHEYKL KNHIASHHEK NAALEVPKYT PPLERQPKTT  240
KHSGTAYGSA SSDRPYACPY EGCEKAYIHE YKLKLHLKRE HPGHMSDENA EHAQANLDNE  300
MDEASDQDAY GGKRSNGKIQ KQSKLKPNLK LPPSKITKRK APPPTPATIA VTKKPWSVNV  360
REEAYNEEDS EETEEEDRDN VEDGWRYAGN NDDDDEETEY ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-341062178119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.HRF9E
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957699.10.0uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-153YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A444ZTX10.0A0A444ZTX1_ARAHY; Uncharacterized protein
STRINGXP_004485467.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]