PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I0YKW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 146aa    MW: 15974.2 Da    PI: 8.8276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I0YKWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-0533721054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 + R +++ +++  L++l+ +      +K + +++Le+A++YI  L
  Aradu.I0YKW 33 KERKEKLSERIVALQQLVSPY-----GKTDTSSVLEEAMQYIGFL 72
                 78999**************99.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.90E-71977No hitNo description
PROSITE profilePS5088811.2992372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-112885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-82983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGHKRSPCSV DQSSYTSIES KRQKANDLSI TTKERKEKLS ERIVALQQLV SPYGKTDTSS  60
VLEEAMQYIG FLHKQVKLLS APYLESSAAT KDPGLEPCSL RSRGLCLVPV SLTIGVAESN  120
GADIWAPIKT TTSPPKFEKE AAQFQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I0YKW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015944452.11e-104transcription factor bHLH153
SwissprotQ7XJU22e-50BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A444X3151e-101A0A444X315_ARAHY; Uncharacterized protein
STRINGGLYMA02G15520.11e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.59e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]