PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.I2J7R

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 173aa MW: 18831.4 Da PI: 8.483

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.I2J7R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.1	4.9e-46	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la ++ Aradu.I2J7R 17 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQDLPMHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLAIAQ 114 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aradu.I2J7R 115 AE 116 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.766	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-45	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKEQGGGGGR KQGAASPCAA CKLLRRRCAQ DCVFAPYFPA DEPHKFANVH RVFGASNVNK 60 MLQDLPMHQR RDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQAQL AIAQAEVVHL 120 KMRQPNYISN GMGPNSPTNS GSPPSKVMDS QAKPIFGMDM VVDQASYDDS MWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	13	118	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	13	118	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.I2J7R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015959233.1	1e-127	LOB domain-containing protein 4
Refseq	XP_025694254.1	1e-127	LOB domain-containing protein 4
Swissprot	Q9SHE9	4e-72	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A445DIX4	1e-126	A0A445DIX4_ARAHY; Uncharacterized protein
STRING	XP_004505337.1	4e-97	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-73	LOB domain-containing protein 4