PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I2WY0
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 495aa    MW: 56891.9 Da    PI: 9.8477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I2WY0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.34.3e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.I2WY0  51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTASLNCPARIYIHPLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..8889***********99998776...8999**************988779***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.137287323IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5288320IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-4298325IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDDSTSDCQL NPSEVNYKFE SNEVPEPLSV VDDQFVPKVR MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREEKWK SKISPTEKTN PTASLNCPAR IYIHPLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRHRHIWV PIYLDHHFWA GMRSTQRSES  180
MYSFFNKFIT RNSSLIQFVK QYDNCLVSRE QAERESDAAD FHTVIPCATK SSIEAQFQDA  240
YAHAKFREVQ AQFRGKANCI TKLTNSALGY SVYEVGEQVS SSIFNKFVVT YDSVAAEIKC  300
QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS  360
KRFGQLVFRS QNICEFASES EELTAILHRA YDNVMAEMES LKVKRKRTSS LSHEDANLES  420
VNELQSPPRI RTRGRPKNRL GSKLDKQIAN ATKKKKMKVL NEGFSLKASW GDRFQGVYST  480
LFGFKKSQIM GVYLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I2WY0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-31FAR1 family protein