PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I5YJE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 509aa    MW: 58145.9 Da    PI: 9.0319
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I5YJEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1552.6e-1751137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.I5YJE  51 KFYRNYAKAAGFSTRVQCTNRK--GNEIKNQLITCSREGKWRSKISP---TEKTNLTAGFNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************988776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1451137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198296332IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4305329IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4307334IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDCEFE FNEFPEPLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVQCTN RKGNEIKNQL ITCSREGKWR SKISPTEKTN LTAGFNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEANRHILVP IYLDHHFWAG  180
MRSTQRSESM HSFFNKYLTR NSSLIQFVKQ YDNCLRSREQ AERESDAADF HTVIPCATKS  240
SIEAQFQDAY THAKFREVQA QFRGKANCIT RLKNSALGYS VYKVGEQVSS SIFDKFAVTY  300
DSVAAEVKCQ CLLFESRGIL CRHALSVLSF EQVSQVSPRY ILERWSKKVK RRHTHIKSSH  360
DEPLMEPRRK RFDQLVFHSQ NICEFASESE ELTVILHRAY DNVMAEMESL KAKRKGRSSL  420
SHEDANLESV NELQSPPRIR TRGRPKNRLG SKLEKQIANA TKKKKTKVLS EINVFDAASA  480
AHSNCSQYQG HVINYQFRIP AAGDNSLGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349370KRRHTHIKSSHDEPLMEPRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I5YJE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-31far-red elongated hypocotyls 3