PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I6NY4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 438aa    MW: 50447 Da    PI: 6.8202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I6NY4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.83e-1264150191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++Y k +GFs+r+++++k+    ei+++  +Cs+eg+ +++ +    +++t+++  ++  a++ ++  k  g w ++k++l+ +H+++p
  Aradu.I6NY4  64 KFYKDYTKAAGFSTRVRSTNKK--GYEIKNQLITCSREGRWKSKISP---TEKTNPTVGVNYPARIYIHTLKdVGAWIISKVVLHYSHPCCP 150
                  6****************98887..899*************9998877...89999*************998879**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-964150IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198304340IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4312337IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDDSTSDCQL NHGEVDSISD CQLNHGEVNF EFESNEVPKP LSVVDEQLVP KVGMTFKKLE  60
DAEKFYKDYT KAAGFSTRVR STNKKGYEIK NQLITCSREG RWKSKISPTE KTNPTVGVNY  120
PARIYIHTLK DVGAWIISKV VLHYSHPCCP TQAEMLKQHR ELSMSVRRTI ENNEEVDPYT  180
DRHIWVPIYL DHHFWAGMKS TQRSESMHSF FNKFITPNNS LIQFVKQYDN CLGSREQAER  240
ELDAAYFHTV IPCATKSSTE AQFQDVYTHQ KGKANYITRL TNSALDYSVY EVGEQVFSSI  300
FNKFMVTYDL VVAEVKCQCL LFESRGILCR HALSVLSFER VSQVSSRYIL EPWSKKRSHD  360
EPMLELRSKR FDELVFCSQN ICEFASKSDE LTAILHRAYD NVMVEMESLK AKRKGTSSLS  420
HEDANLESVN ELQSPPRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KKRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I6NY4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-123HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-155protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-27far-red elongated hypocotyls 3