PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.I7259

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 485aa MW: 53531.9 Da PI: 9.3384

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.I7259	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aradu.I7259 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	11.6	0.00086	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Aradu.I7259 159 WKCDKCSKIYAVQSDWKAHSKTC 181 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.21E-7	82	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.7E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	124	154	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-4	147	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.21E-7	154	179	No hit	No description
SMART	SM00355	180	159	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MFPAVMSNST SLSEEASVSS GTRIQDFGAT LNHVVSTISP HQQQQQQQPP QKIKKKRSLP 60 GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK 120 KRAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARVSAN QHQLITTPSN PLLQSLFLFP 240 TQNNFINPWD PQSSQENPNP NNNNTLLHNI NIKPEVQNFH IPNSDNAPPL FLHQNPSKNN 300 TIMMTSPFRN NPHVRMQPQS NSANNAAAAA TSAHLSATAL LQKAATVGAA AITGPNASLG 360 VGQHVTRHVT ELGDMTQLDS VHFMNNMGVG GFNNNTRSLK SSDDLTRDFL GLTGDNNGGR 420 GGSCDGGNAG AVDVSMNVKD MLTYTGNIDY QQQHHHHLRH PLFKSPQQGF GFLGTTTAPE 480 SWGNC

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MFPAVMSNST SLSEEASVSS GTRIQDFGAT LNHVVSTISP HQQQQQQQPP QKIKKKRSLP  60
GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK  120
KRAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARVSAN QHQLITTPSN PLLQSLFLFP  240
TQNNFINPWD PQSSQENPNP NNNNTLLHNI NIKPEVQNFH IPNSDNAPPL FLHQNPSKNN  300
TIMMTSPFRN NPHVRMQPQS NSANNAAAAA TSAHLSATAL LQKAATVGAA AITGPNASLG  360
VGQHVTRHVT ELGDMTQLDS VHFMNNMGVG GFNNNTRSLK SSDDLTRDFL GLTGDNNGGR  420
GGSCDGGNAG AVDVSMNVKD MLTYTGNIDY QQQHHHHLRH PLFKSPQQGF GFLGTTTAPE  480
SWGNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	155	219	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-35	155	219	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.I7259

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015948550.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-125	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A371FZ55	0.0	A0A371FZ55_MUCPR; Protein indeterminate-domain 12
STRING	GLYMA10G03541.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-112	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]