PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I8FP6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35322.6 Da    PI: 7.9261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I8FP6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-18158212256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Aradu.I8FP6 158 RKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTK 212
                  788899***********************************************98 PP
2HD-ZIP_I/II1201.3e-38158247191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq+ lLEe+F+++++L+p++K++la+eL+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+kev+eLr +l
  Aradu.I8FP6 158 RKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELR-TL 247
                  69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.9E-158127IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.4E-19143212IPR009057Homeodomain-like
SuperFamilySSF466891.67E-18147215IPR009057Homeodomain-like
PROSITE profilePS5007117.491154214IPR001356Homeobox domain
SMARTSM003891.0E-14156218IPR001356Homeobox domain
CDDcd000868.55E-15158215No hitNo description
PfamPF000461.6E-15158212IPR001356Homeobox domain
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
SMARTSM003402.1E-24214257IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9214247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGEKDIGNED VGLSLSLSLS LGRGCSSSPP PLKPQRSVPM NNINEKSSWN ELFQLLPQAM  60
PLTEKLNMQN AVDRSTDMRP LFGGGINMNS MPSTAETPPD CNQDNRDSSP NNSSLSSGSG  120
CKRSEREEDN GAAVAGIELA SCSRGSDDED GGGGEAARKK LRLTKEQSML LEETFKQHNT  180
LNPKQKQTLA KELNLRARQV EVWFQNRRAR TKLKQTEVDC EYLKRYCENL SEENRRLQKE  240
VQELRTLKLS PQLYMHMNPP TTLTMCPSCE RVAVSSASSS ASTAHVPALQ SNCNNSLGPN  300
IQRPVRVNTW PFDSPISRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I8FP6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020996758.10.0homeobox-leucine zipper protein HAT4 isoform X1
SwissprotP466015e-80HAT2_ARATH; Homeobox-leucine zipper protein HAT2
SwissprotP466021e-79HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A445DBZ50.0A0A445DBZ5_ARAHY; Uncharacterized protein
STRINGGLYMA18G48880.13e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-69homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]