PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IC1L6
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 258aa    MW: 29845.2 Da    PI: 4.9235
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IC1L6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-1826100147
                      TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT+eEd ll+++vk +G g                              W+tIar ++ gRt++++k++w+++
      Aradu.IC1L6  26 KGPWTAEEDRLLIEYVKIHGEGrwnsvarlaeewkelqaemgelpetrpqeGWSTIARSLP-GRTDNEIKNYWRTH 100
                      79***********************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.08921105IPR017930Myb domain
SuperFamilySSF466895.62E-152497IPR009057Homeodomain-like
SMARTSM007171.1E-1425103IPR001005SANT/Myb domain
PfamPF002497.8E-102655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-192788IPR009057Homeodomain-like
CDDcd001671.73E-1128101No hitNo description
PfamPF002491.2E-677100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-489139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYWGGNMGMG WGVMIEEEVG GGGWRKGPWT AEEDRLLIEY VKIHGEGRWN SVARLAEEWK  60
ELQAEMGELP ETRPQEGWST IARSLPGRTD NEIKNYWRTH FKKKVKNPSD AAEKAKSRLL  120
RRQQFQQQQQ LKQQQQQIQQ QQQEIQFNLD MKGIMMMNLL EMGNHNNDNR RVPSISQQEP  180
QDMYQQQSST EEEHGYFYHP MFINNINGNN NDNYSPAATE SSSDEILWDG LWNLDDVLGN  240
FTAASATSKP TTLVAPFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IC1L6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941080.11e-130myb-related protein 315
RefseqXP_025619789.11e-130transcription factor MYB2
TrEMBLA0A445BH611e-128A0A445BH61_ARAHY; Uncharacterized protein
STRINGGLYMA10G33450.12e-74(Glycine max)
STRINGXP_007144143.11e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-38myb domain protein 79