PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.IDI63

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 257aa MW: 31011.1 Da PI: 9.7238

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.IDI63	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.6	1.4e-10	7	95	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkvl +++ + + k+f++++ g+ + + le ++g + +vk rk +++++l +GWk+ v+ +Lk fv+Fk++g+s+fel v Aradu.IDI63 7 FFKVLRHPNLYDE--TKVTKSFVKKYwkGLA--N--PVLLELPTGDKIKVKW-SRKEDESIWLNDGWKRVVELLELKHQYFVIFKFKGDSKFELIV 95 7788855555544..4678*****85433..4..499*********.5888888******************************8865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-14	4	99	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-13	4	105	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.9E-8	7	95	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0079	7	99	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MPYHNMFFKV LRHPNLYDET KVTKSFVKKY WKGLANPVLL ELPTGDKIKV KWSRKEDESI 60 WLNDGWKRVV ELLELKHQYF VIFKFKGDSK FELIVFDLSA MEIDYLSLRS IRNDHRQETN 120 RNHNDDEDDE DQSIEIVNEK QKQFRRRSRT ELQYMIIIFY LFVFTSCKIP YLIMHAILMN 180 FFYLRNSERA CSERLKRVQS DSKIAPKKDN KPLAVEFQSK KALMNRAQVF CLNSKYPCFI 240 LEMQRSYISH DLLILRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.IDI63

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029152502.1	5e-69	B3 domain-containing protein REM6
TrEMBL	A0A445B0W5	9e-58	A0A445B0W5_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-12	B3 family protein