PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IH9CV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 865aa    MW: 94853.2 Da    PI: 6.5451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IH9CVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-182280357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Aradu.IH9CV 22 KYVRYTAEQVEALERVYIECPKPSSLRRQQLIRDCpilaNIEPKQIKVWFQNRRCREKQ 80
                 56789****************************************************97 PP
2START160.81e-501653722204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++
  Aradu.IH9CV 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYTQ 261
                  7899******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae++pSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Aradu.IH9CV 262 TYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGTGPNaaaAAQFVRAEMRPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 359
                  ***********************************98888888999**************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Aradu.IH9CV 360 AQKMTIAALRYIR 372
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-161784IPR009057Homeodomain-like
PROSITE profilePS5007115.0461781IPR001356Homeobox domain
SMARTSM003895.2E-141985IPR001356Homeobox domain
CDDcd000861.88E-142282No hitNo description
PfamPF000462.8E-152380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-172480IPR009057Homeodomain-like
CDDcd146861.84E-674113No hitNo description
PROSITE profilePS5084826.833155383IPR002913START domain
CDDcd088759.01E-71159375No hitNo description
Gene3DG3DSA:3.30.530.208.5E-20164364IPR023393START-like domain
SMARTSM002343.5E-42164374IPR002913START domain
SuperFamilySSF559614.81E-34164376No hitNo description
PfamPF018525.1E-48165372IPR002913START domain
PfamPF086703.6E-43732864IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MAVAQHHHRE SSIDKHLDSS GKYVRYTAEQ VEALERVYIE CPKPSSLRRQ QLIRDCPILA  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK QVSQLVCENG  120
YMKQQLHTLQ PSAATTDASC DPVVSSSTTQ QSMRDANSPA GFLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGT  300
GPNAAAAAQF VRAEMRPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA  360
QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAVNG FNDDGWSVLN  420
CDGAEDVIIA VSSTKNFSGT SNPASSLTFL GGILCAKASM LLQNIPPAVL VRFLREHRSE  480
WADFNVDAYS AASLKSGSYA YPGMRPTRFT GNQTIMSLGH TIEHQEMLEV IRLEGHSLAQ  540
EDAFASRDVH LLQLCSGIDE NAVGACSELI FAPIDEMFPD DAPLLPSGFR IIPLDSKPGD  600
KKDSMTGSQT LDLTSGFEVG PTTNGARDAV SCHSARSVLT IAFQFPFDSS LQDNVAIMAR  660
QYIRSVISSV QRVAMAISPS GINPAVGSKL SPGSPEALTL ANWICCSYRQ VCICLSNAAL  720
HFFVLFSSKN SYYLGAELLR SDSLIGESVL KHLWHHQDAI LCCSLKSVPV FIFANQAGLD  780
MLETTLVALQ DITLDKIFDE SGRKALFADF AKLMQQGFAY LPAGICMSTM GRHVSFEQAI  840
AWKVLAEEDN SVHCLAFSFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IH9CV
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935757.10.0homeobox-leucine zipper protein REVOLUTA isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A445BW530.0A0A445BW53_ARAHY; Uncharacterized protein
STRINGXP_007132262.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]