PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IHD20
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 420aa    MW: 47991.9 Da    PI: 9.8008
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IHD20genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.1e-1727113191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++ +++ r ++i+++  +Cs+egk +++ +    +++t+++t  +C  ++ ++  k  g w ++k++l+H H+++p
  Aradu.IHD20  27 KFYRNYAKAAGFSTRVRSINRK-R-NKIKNQLITCSREGKWKSKISP---TEKTNPTTGLNCPTRIYIHTLKdVGAWIISKVVLDHLHPCCP 113
                  6****************99987.4.4599************998877...999***************998879**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1427113IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.087207243IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033218245IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGPLSVVDDQ FVPNVGMTFT TLEDAGKFYR NYAKAAGFST RVRSINRKRN KIKNQLITCS  60
REGKWKSKIS PTEKTNPTTG LNCPTRIYIH TLKDVGAWII SKVVLDHLHP CCPSKAEMLK  120
QHMELSMSIR RTIENNKEAD FHTVISCATK SSIEAEFQDV YTHQKFREVQ TQFRGKENCI  180
TRLTNSALGY SVYEVGEQVS SLIFNKFVVT YDSVAAEVKC QCLLFESRGI LCRHTLSVLS  240
FEQVSQVSPR YILERWSKKV KRLHTHIKSS HDEPLLEPRS KRFDQLVFHS QNICEFASES  300
EELTTILYRA YDNVIVEMES LKAKRKGTYF LSHEDANLES VNELQSPPRI RTRGRSKNRL  360
GSKLEKQIAN ATKKKKTKGL NELNLFDAAS VVHSNSSQYQ RCVMNYQFRV PAAADNSLGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IHD20
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-178protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445BCV50.0A0A445BCV5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-17far-red elongated hypocotyls 3