PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IM8YW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 243aa    MW: 27703.2 Da    PI: 5.6808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IM8YWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-17550348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
      Aradu.IM8YW  5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                     7*******************************************97 PP
2Myb_DNA-binding49.69.3e-1656100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ +eE e +v+++k+lG++ W++Ia +++ gRt++++k++w+ +
      Aradu.IM8YW  56 RGNFAEEEVEMIVKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                      8999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.777150IPR017930Myb domain
SMARTSM007175.8E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-21557IPR009057Homeodomain-like
SuperFamilySSF466891.47E-27597IPR009057Homeodomain-like
PfamPF002491.2E-15550IPR001005SANT/Myb domain
CDDcd001671.35E-10550No hitNo description
PROSITE profilePS5129424.95151105IPR017930Myb domain
SMARTSM007174.7E-1555103IPR001005SANT/Myb domain
PfamPF002492.9E-135698IPR001005SANT/Myb domain
CDDcd001671.02E-1058101No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2458106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
EEEVEMIVKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNAMEG EDRSQATKNV  120
EVIRPQARNI GTSSSMKRRR GIQGESSSPI ESDLLAQQEI SGMSSTMSFD ADGQSHHNML  180
ESQLENNIYS CLEQQDIVGE LPMDFRFEGG VEEIINAGEG SSGQWDWDDL LLDMDLYKDF  240
ATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2251079110B-MYB
1gv2_A4e-2251056105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-2111134159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-2111134159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-2251056105C-Myb DNA-Binding Domain
1msf_C4e-2251056105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IM8YW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960816.10.0transcription factor MYB113-like
TrEMBLA0A444ZNZ21e-180A0A444ZNZ2_ARAHY; Uncharacterized protein
STRINGXP_007140451.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-58myb domain protein 113