PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.IPH1G

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 132aa MW: 15376.8 Da PI: 10.2782

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.IPH1G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.2	9.5e-16	44	130	9	99
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +++r l+ f +++ +k+++ +++l+ +sW ++iy+ +s+ +++ GW++F++a +L++gD++vF+l+++++ + v+++r+ Aradu.IPH1G 44 SNPRRSRPNLSAIFYRKYFKKNQQ--DVKLQF-GKESWPATIIYNPTSKNSFISVGWSSFARASKLEAGDVCVFELINKKDL-FDVHICRT 130 555667778889999999766445..566544.669*****************************************87444.69999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-20	29	129	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.06E-17	30	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.51E-15	35	129	No hit	No description
PROSITE profile	PS50863	10.842	36	131	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-12	37	131	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-13	47	130	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MLIFYNSVMI SESLKPVTHG IQLFKEVKEL NSQNPSFMVK IRDSNPRRSR PNLSAIFYRK 60 YFKKNQQDVK LQFGKESWPA TIIYNPTSKN SFISVGWSSF ARASKLEAGD VCVFELINKK 120 DLFDVHICRT QY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.IPH1G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934490.1	1e-82	B3 domain-containing protein Os12g0591400-like
Refseq	XP_025607539.1	5e-81	B3 domain-containing protein LOC_Os12g40080 isoform X1
Refseq	XP_025607540.1	5e-81	B3 domain-containing protein LOC_Os12g40080 isoform X2
Refseq	XP_025607541.1	3e-81	B3 domain-containing transcription factor VRN1 isoform X3
TrEMBL	A0A445B0T0	2e-77	A0A445B0T0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17222	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	3e-09	related to vernalization1 1