PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IYV5T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 338aa    MW: 38647.1 Da    PI: 9.1273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IYV5TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-11511202091
         FAR1  20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +++++ +ei+++  +Cs+egk +++ ++   +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.IYV5T  51 STNRKGNEIKNQLITCSREGKWKSKISS---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 120
                  3446677899*************99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-952120IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186283319IPR007527Zinc finger, SWIM-type
PfamPF044347.7E-5285316IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4294321IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVDSTSDSQL NQGEVDYEFE SNEVPETLGC RSELSLGVFV SILLLSFGVR STNRKGNEIK  60
NQLITCSREG KWKSKISSTE KTNPTAGLNC PARIYIHTLK DVGAWIISKV VLDHSHPCCP  120
SKAEMLKQHR ELSMSIRRTI ENNKEAGIRP NRHIWVPIYL DHHFWAGMRS TQRSESMHSV  180
FNKFITRNSS LIQFVKQYDN CLGSRELAER ESDAADFHKV IPCATKSSIE AQFQDVYTHQ  240
KFREVQAQFR GKANCITRLT NFALGYSVYE VGEQVFSSIF NKFVVTYDSV AAEVKCQCLL  300
FESRGILCRH ALSVLSFEQV SQVSPRYILK RWSKKVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IYV5T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981527.11e-124protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444YSY60.0A0A444YSY6_ARAHY; Uncharacterized protein
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-30far-red elongated hypocotyls 3